PyMOL

PyMOL MCP Server enables AI assistants to interact with the PyMOL molecular visualization software through a socket connection. Built by Vishnu Rajan Tejus, it provides a comprehensive set of tools for molecular visualization, viewing operations, file handling, and structural analysis. The server parses natural language commands into PyMOL-compatible Python code, executes them via a socket connection, and returns the results. This implementation is particularly valuable for researchers and scientists who need to manipulate and analyze molecular structures directly within their AI assistant conversations without switching contexts.